http://bmcwiki.mit.edu/index.php?action=history&feed=atom&title=BioMicroCenter%3AEducation 2026-07-14T04:08:00Z Revision history for this page on the wiki MediaWiki 1.43.1 http://bmcwiki.mit.edu/index.php?title=BioMicroCenter:Education&diff=51&oldid=prev 2009-01-07T20:27:21Z

<p>1 revision</p> <p><b>New page</b></p><div>{{BioMicroCenter}}<br /> <br /> The BioMicro Center offers formal training programs for commercial software as well as office hours during which Center staff help with data analysis. The Center also offers a [[BioMicroCenter:microarray club]] every two weeks with expert speakers from various institutes and industries. In addition to the microarray club, the Center sponsors an annual conference with a focus on computational and systems biology.<br /> <br /> The BioMicro Center offers a link to current [[BioMicroCenter:microarray publications]] though the [[BioMicroCenter:pubmed search engine]].<br /> <br /> The BioMicro Center provides information to users regarding current normalization strategies used in the field. References that our users have found useful are listed below.<br /> <br /> ==Two color array normalization==<br /> <br /> [[BioMicroCenter:Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments]]<br /> <br /> (Sandrine Dudoit, Yee Hwa Yang, Matthew J. Callow, and Terence P. Speed) <br /> ([[Image:differentially expressed genes in replicated cDNA microarray experiments|download]])<br /> <br /> ==Affymetrix (DChip)==<br /> <br /> [[BioMicroCenter:Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection]]<br /> <br /> (Cheng Li and Wing Hung Wong) PNAS, 2001<br /> ([[Image:Model-based analysis of oligonucleotide arrays|download]])<br /> <br /> [[BioMicroCenter:Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application]]<br /> <br /> (Cheng Li and Wing Hung Wong) Genome Biology, 2001<br /> ([[Image:Model validation, design issues and standard error application|download]])<br /> <br /> ==Basic Research Applications of DChip==<br /> <br /> [[BioMicroCenter:“Stemness”: Transcriptional Pro.ling of Embryonic and Adult Stem Cells]]<br /> (Miguel Ramalho-Santos, Soonsang Yoon, Yumi Matsuzaki, Richard C. Mulligan, Douglas A. Melton) Science, 2002 <br /> ([[Image:Stemness|download]])<br /> <br /> ==Affymetrix (RMA)==<br /> <br /> [[BioMicroCenter:Exploration, Normalization, and Summaries of High Density Oligonucleotide Array Probe Level Data]]<br /> <br /> (Rafael A. Irizarry, Bridget Hobbs, Francois Collin, Yasmin D. Beazer-Barclay, Kristen J. Antonellis, Uwe Scherf, Terence P. Speed)<br /> ([[Image:High Density Oligonucleotide Array Probe Level Data|download]])<br /> <br /> [[BioMicroCenter:Summaries of Affymetrix GeneChip probe level data]] <br /> <br /> (Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs and Terence P. Speed) Nucleic Acids Research, 2003 <br /> ([[Image:Summaries of Affymetrix GeneChip probe level data|download]])<br /> <br /> [[BioMicroCenter:A comparison of normalization methods for high density oligonucleotide array data based on variance and bias]]<br /> <br /> (B. M. Bolstad, R. A. Irizarry, M. Astrand and T. P. Speed) Bioinformatics, 2003 <br /> ([[Image:comparison of normalization methods|download]])<br /> <br /> ==Gene Ontology==<br /> <br /> [[BioMicroCenter:GOstat: Find statistically overrepresented Gene Ontologies within a group of genes]]<br /> <br /> (Beissbarth T, Speed TP) Bioinformatics, 2004 <br /> ([[Image:GOstat]])<br /> <br /> &lt;/div&gt;</div>

imported>Bill Flanagan