Editing BioMicroCenter:BIG meeting (section)

==2012==
{| border=1 
 ! width 100 align="center"|DATE
 ! width 100 align="center"|TIME 
 ! width 100 align="center"|Presenter 
 ! width 100 align="center"|Location 
 ! width 100 align="center"|Room 
 ! width 100 align="center"|NOTES
 |-
 | 1/26 (Thursday)
 | 12p 
 | Brian Haas (Broad Institute)
 | MIT
 | [http://whereis.mit.edu/?go=76 76-558]
 | [http://www.ncbi.nlm.nih.gov/pubmed/21572440 Trinity]
 |-
 | 2/23 (Thursday)
 | 12p 
 | Brad Chapman 
 | MIT
 | [http://whereis.mit.edu/?go=68 68-180]
 | Extending the GATK for variant comparisons; [http://chapmanb.github.com/bcbio.variation/presentations/gatk_clojure.pdf slides] [https://github.com/chapmanb/bcbio.variation code]
 |-
 | 3/22 (Thursday)
 | 12p 
 | Vincent Butty
 | MIT
 | [http://whereis.mit.edu/?go=68 68-181]
 | RNA-Seq quality control and quantitation of alternative RNA processing
 |-
 | 4/12 (Thursday)
 | 12p 
 | Kip Bodi
 | Tufts Medical
 | 
 | Journal Club
 |-
 | 5/3
 | 12p 
 | Huiming Ding
 | MIT
 | [http://whereis.mit.edu/?go=68 68-180]
 | "High-throughput generation, optimization and analysis of genome-scale metabolic models." by Henry, C. S. et al.
 |-
 | 5/24 
 | 12p 
 | Joshua Ainsley (Tufts) - Hosted by Lakshmanan Iyer
 | Tufts
 | [http://campusmaps.tufts.edu/boston/?fid=B011 Sackler 851]
 | Characterizing dendritic translation with RNA-Seq
 |-
 | 6/7
 | 12p 
 | Toshi Ohsumi
 | MGH
 | Sinches 5 - Darwin Room
 | MolBioLib: a C++11 Bioinformatics Framework
 |-
 | 6/21
 | 12p 
 | Juli Klemm (NIH/NCI)
 | MIT
 | [http://whereis.mit.edu/?go=68 68-156]
 | [[BioMicroCenter:BIG_meeting:KlemmTalk|Informatics at NCI]]
 |-
 | 7/12
 | 12p 
 | Ryan Abo
 | MIT
 | [http://whereis.mit.edu/?go=68 68-274]
 | discovery of active enhancers using GRO-seq data. <BR>
Core, LJ, Waterfall, JJ, Lis, JT (2008). Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science, 322, 5909:1845-8. <BR>
Melgar, MF, Collins, FS, Sethupathy, P (2011). Discovery of active enhancers through bidirectional expression of short transcripts. Genome Biol., 12, 11:R113.
 |-
 | 7/26
 | 12p 
 | Yanqun Wang
 | MGH
 | TBA
 | TBA
 |-
 | 9/13
 | 12p 
 | Stuart Levine
 | MIT
 | [http://whereis.mit.edu/?go=68 68-156]
 | Replicates in Informatics: http://genome.cshlp.org/content/22/9/1813.full.pdf+html 
 |-
 | 9/27
 | 12p 
 | Charlie Whittaker
 | KI
 | [http://whereis.mit.edu/?go=68 68-156]
 | Teaching Bioinformatics
 |-
 | 10/18
 | 12p 
 | Brad Chapman
 | MIT
 | [http://whereis.mit.edu/?go=68 68-156]
 | Biological resources for Amazon: CloudBioLinux, CloudMan, BioCloudCentral [http://www.slideshare.net/chapmanb/big-cloud-2012 slides]
 |-
 | 11/8
 | 12p 
 | Ruslan Sadreyev
 | MGH
 | Darwin Room
 | Methods for analyzing allelic expression of RNA.
 |-
 | 11/29
 | 12p 
 | George Bell
 | WI
 | 4th floor conference room
 | TargetScan
 |-
 | 12/13
 | 12p 
 | Rory Kirchner
 | MIT
 | 68-156
 | iPython and iPython Notebook
 |-
|}